Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs59987487 | chr1:146889113 | C/A | 9.74E-7 | 410 | 16.87 | 14.6 | 3.6 | KM Plot |
| HNSC | rs6004050 | chr22:24461944 | A/G | 3.54E-5 | 411 | 10.02 | 14.27 | 16.4 | KM Plot |
| HNSC | rs6004051 | chr22:24462072 | A/C | 3.85E-6 | 411 | 8.63 | 14.67 | 16.33 | KM Plot |
| HNSC | rs6007761 | chr22:46670394 | C/T | 3.02E-5 | 412 | 11.67 | 18.8 | 16.28 | KM Plot |
| HNSC | rs6008443 | chr22:46668692 | C/T | 3.51E-6 | 411 | 16.43 | 16.8 | 10.77 | KM Plot |
| HNSC | rs6008770 | chr22:46748310 | A/G | 8.0E-9 | 412 | 16.2 | 19.55 | 9.62 | KM Plot |
| HNSC | rs61184758 | chr1:161731030 | AG/A | 7.64E-5 | 404 | 16.17 | 16.38 | 4.3 | KM Plot |
| HNSC | rs61244338 | chr14:65640210 | G/A | 2.26E-5 | 405 | 16.37 | 15.73 | 7.17 | KM Plot |
| HNSC | rs61760973 | chr11:34988343 | T/C | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs61801234 | chr1:161716942 | A/G | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs61801235 | chr1:161722649 | T/A | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs61801236 | chr1:161723388 | G/A | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs61801237 | chr1:161723392 | G/A | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs61801238 | chr1:161724303 | G/A | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs61801239 | chr1:161725234 | A/G | 6.28E-5 | 406 | 16.17 | 17.3 | 4.3 | KM Plot |